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In this peer-reviewed Commentary, we argue that ultra-slow-growing microbes should be referred to as "aeonophiles". 

Participation in authentic scientific research has been shown to greatly benefit undergraduate students, both in terms of perception of science and knowledge of scientific concepts. We define authentic scientific research as projects in which results are unknown prior to performing experiments and are appropriate for presentation in peer-reviewed scientific journals and/or scientific conferences. Kindergarten through grade 12 (K–12) students have less frequent opportunities to participate in authentic research than university students, and the effects of research participation on such students are less well understood. From 2013 to the present, we organized two collaborations with different groups of K–12 students and teachers, each aimed at engaging K–12 students in authentic geoscience research, with a focus on K–12 students from excluded backgrounds who may have had restricted access to resources. First, the Malcolm X Shabazz Aquatic Geochemistry Team was an initiative to involve high school students at Malcolm X Shabazz High School in Newark, New Jersey, USA, in research focused on the activities of microbial communities inhabiting streams and rivers in New Jersey and eastern Pennsylvania. Second, the Integrating Continuous Experiential Activities for Geoscience Education (ICE-AGE) project is a Pathways into the Earth, Ocean, Polar and Atmospheric & Geospace Sciences (GEOPAths) project funded by the National Science Foundation that involves K–12 students in experiential learning through diverse means, including involving middle school students taking part in a summer program pseudonymously referred to as the Liberation Literacy Program (LLP) in geoscience research on a number of topics. Here, we report qualitative observations of the successes and challenges of these programs, as well as lessons learned, which may be useful for other researchers seeking to involve groups of K–12 students in authentic geoscience research education. 

We present geochemical data from gas samples from ~1200 km of arc in the Central Volcanic Zone of the Andes (CVZA), the volcanic arc with the thickest (~70 km) continental crust globally. The primary goals of this study are to characterize and understand how magmatic gases interact with hydrothermal systems, assess the origins of the major gas species, and constrain gas emission rates. To this end, we use gas chemistry, isotope compositions of H, O, He, C, and S, and SO2 fluxes from the CVZA. Gas and isotope ratios (CO2/ST, CO2/CH4, H2O/ST, δ13C, δ34S, 3He/4He) vary dramatically as magmatic gases are progressively affected by hydrothermal processes, reflecting removal and crustal sequestration of reactive species (e.g., S) and addition of less reactive meteoric and crustal components (e.g., He). The observed variations are similar in magnitude to those expected during the magmatic reactivation of volcanoes with hydrothermal systems. Carbon and sulfur isotope compositions of the highest temperature emissions (97–408 ◦C) are typical of arc magmatic gases. Helium isotope compositions reach values similar to upper mantle in some volcanic gases indicating that transcustal magma systems are effective conduits for volatiles, even through very thick continental crust. However, He isotopes are highly sensitive to even low degrees of hydrothermal interaction and radiogenic overprinting. Previous work has significantly underestimated volatile fluxes from the CVZA; however, emission rates from this study also appear to be lower than typical arcs, which may be related to crustal thickness. 

Molecular hydrogen is produced by the fermentation of organic matter and consumed by organisms including hydrogenotrophic methanogens and sulfate reducers in anoxic marine sediment. The thermodynamic feasibility of these metabolisms depends strongly on organic matter reactivity and hydrogen concentrations; low organic matter reactivity and high hydrogen concentrations can inhibit fermentation so when organic matter is poor, fermenters might form syntrophies with methanogens and/or sulfate reducers who alleviate thermodynamic stress by keeping hydrogen concentrations low and tightly controlled. However, it is unclear how these metabolisms effect porewater hydrogen concentrations in natural marine sediments of different organic matter reactivities. MethodsWe measured aqueous concentrations of hydrogen, sulfate, methane, dissolved inorganic carbon, and sulfide with high-depth-resolution and 16S rRNA gene assays in sediment cores with low carbon reactivity in White Oak River (WOR) estuary, North Carolina, and those with high carbon reactivity in Cape Lookout Bight (CLB), North Carolina. We calculated the Gibbs energies of sulfate reduction and hydrogenotrophic methanogenesis. ResultsHydrogen concentrations were significantly higher in the sulfate reduction zone at CLB than WOR (mean: 0.716 vs. 0.437 nM H₂) with highly contrasting hydrogen profiles. At WOR, hydrogen was extremely low and invariant (range: 0.41–0.52 nM H₂) in the upper 15 cm. Deeper than 15 cm, hydrogen became more variable (range: 0.312–2.56 nM H₂) and increased until methane production began at ~30 cm. At CLB, hydrogen was highly variable in the upper 15 cm (range: 0.08–2.18 nM H₂). Ratios of inorganic carbon production to sulfate consumption show AOM drives sulfate reduction in WOR while degradation of organics drive sulfate reduction in CLB. DiscussionWe conclude more reactive organic matter increases hydrogen concentrations and their variability in anoxic marine sediments. In our AOM-dominated site, WOR, sulfate reducers have tight control on hydrogen via consortia with fermenters which leads to the lower observed variance due to interspecies hydrogen transfer. After sulfate depletion, hydrogen accumulates and becomes variable, supporting methanogenesis. This suggests that CLB’s more reactive organic matter allows fermentation to occur without tight metabolic coupling of fermenters to sulfate reducers, resulting in high and variable porewater hydrogen concentrations that prevent AOM from occurring through reverse hydrogenotrophic methanogenesis. 

Abstract Microbial aerobic methane oxidation is an important sink for aquatic methane worldwide. Despite its importance to global methane fluxes, few aerobic methane oxidation rates have been obtained in freshwater or marine environments without imposing changes to the microbial community through use of ex situ methods. A novel in situ incubation method for continuous time‐series measurements was used in Jordan Lake, North Carolina, during 2020–2021, to determine reaction kinetics for aerobic methane oxidation rates across a wide range of naturally varying methane (55–1833 nM) and dissolved oxygen (DO; 28–366 μM) concentrations and temperatures (17–30°C). Methane oxidation began immediately at the start of each of 21 incubations and methane oxidation rates were 1^storder with respect to methane. The data density allowed for accurate calculation of 1^st‐order rate constants,k, that ranged from 0.018 to 0.462 h⁻¹(R² > 0.967). Addition of ammonium (20–45 μM) to natural concentrations ranging from 0.057 to 2.4 μM did not change aerobic methane oxidation rate kinetics, suggesting that the natural population of aerobic methane oxidizers in this eutrophic lake was not nitrogen limited. Values ofkinversely correlated most strongly with initial DO concentrations (R² = 0.82) rather than temperature. Values forkincreased with Julian day throughout our sampling period, suggesting seasonal influences on methane oxidation via responses to geochemical changes or shifts in microbial community abundance and composition. These experiments demonstrate a high variability in the enzymatic capacity for 1^st‐order methane oxidation rates in this eutrophic lake that is tightly and inversely coupled to oxygen concentrations. Measurements of in situ aerobic methane oxidation rate constants allow for the direct quantification and modeling of the microbial community's capacity for methane oxidation over a wide range of natural methane concentrations. 

Subduction of the Cocos and Nazca oceanic plates beneath the Caribbean plate drives the upward movement of deep fluids enriched in carbon, nitrogen, sulfur, and iron along the Central American Volcanic Arc (CAVA). These compounds fuel diverse subsurface microbial communities that in turn alter the distribution, redox state, and isotopic composition of these compounds. Microbial community structure and functions vary according to deep fluid delivery across the arc, but less is known about how microbial communities differ along the axis of a convergent margin as geological features (e.g., extent of volcanism and subduction geometry) shift. Here, we investigate changes in bacterial 16S rRNA gene amplicons and geochemical analysis of deeply-sourced seeps along the southern CAVA, where subduction of the Cocos Ridge alters the geological setting. We find shifts in community composition along the convergent margin, with communities in similar geological settings clustering together independently of the proximity of sample sites. Microbial community composition correlates with geological variables such as host rock type, maturity of hydrothermal fluid and slab depth along different segments of the CAVA. This reveals tight coupling between deep Earth processes and subsurface microbial activity, controlling community distribution, structure and composition along a convergent margin. 

Abstract High-elevation arid regions harbor microbial communities reliant on metabolic niches and flexibility to survive under biologically stressful conditions, including nutrient limitation that necessitates the utilization of atmospheric trace gases as electron donors. Geothermal springs present “oases” of microbial activity, diversity, and abundance by delivering water and substrates, including reduced gases. However, it is unknown whether these springs exhibit a gradient of effects, increasing their impact on trace gas-oxidizers in the surrounding soils. We assessed whether proximity to Polloquere, a high-altitude geothermal spring in an Andean salt flat, alters the diversity and metabolic structure of nearby soil bacterial populations compared to the surrounding cold desert. Recovered DNA and metagenomic analyses indicate that the spring represents an oasis for microbes in this challenging environment, supporting greater biomass with more diverse metabolic functions in proximal soils that declines sharply with radial distance from the spring. Despite the sharp decrease in biomass, potential rates of atmospheric hydrogen (H2) and carbon monoxide (CO) uptake increase away from the spring. Kinetic estimates suggest this activity is due to high-affinity trace gas consumption, likely as a survival strategy for energy/carbon acquisition. These results demonstrate that Polloquere regulates a gradient of diverse microbial communities and metabolisms, culminating in increased activity of trace gas-oxidizers as the influence of the spring yields to that of the regional salt flat environment. This suggests the spring holds local importance within the context of the broader salt flat and potentially represents a model ecosystem for other geothermal systems in high-altitude desert environments. 

Subsurface environments are among Earth’s largest habitats for microbial life. Yet, until recently, we lacked adequate data to accurately differentiate between globally distributed marine and terrestrial surface and subsurface microbiomes. Here, we analyzed 478 archaeal and 964 bacterial metabarcoding datasets and 147 metagenomes from diverse and widely distributed environments. Microbial diversity is similar in marine and terrestrial microbiomes at local to global scales. However, community composition greatly differs between sea and land, corroborating a phylogenetic divide that mirrors patterns in plant and animal diversity. In contrast, community composition overlaps between surface to subsurface environments supporting a diversity continuum rather than a discrete subsurface biosphere. Differences in microbial life thus seem greater between land and sea than between surface and subsurface. Diversity of terrestrial microbiomes decreases with depth, while marine subsurface diversity and phylogenetic distance to cultured isolates rivals or exceeds that of surface environments. We identify distinct microbial community compositions but similar microbial diversity for Earth’s subsurface and surface environments.